rs48258038 SNP Detail

Summary

• ID
  rs48258038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145397886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCTGTCA ACCCCTTGTG AAGGGATGAG GTTGCAGCTG
  TCAGTAACAG CTGCAACAAT AACACTAGGT CTCTATAGTG TCCTTCTTTA TGGGAGCCAA
  Y
  GTGAATACAA ACAATATACT AAGTCATTTA TCCCTTAAGG AATGTGTTTA TTCAGGAACA
  GCTGGCCACA AGTGAATGCA AGTGTGTGAC TTCCCAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147835071	ENSMUSSNP1505557	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48258038					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145397886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14092	predicted gene 14092			984 bp upstream
Rr566543	regulatory region 566543			within coordinates
Rr566544	regulatory region 566544			1657 bp proximal
Rr566545	regulatory region 566545			1760 bp proximal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant