rs48258418 SNP Detail

Summary

• ID
  rs48258418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGATAA GAGAAGGAAC
  AAATAAGATT GAGTGACTAA AGACCCTTGA GAGTTGAAGA AAAAGCAGCA GAGAGGCCAG
  CACATTTCTG GCTCAGGTGT TCAGGAAGAA CATGGCTAAA CTACCCAGAA AGCCCAACCT
  GAAAACCTAC AGAAACAAGA TTACTCTTCT GTCAGCTCCA GCTCCAAGGA TTTAGAGCCA
  Y
  GATGAACAGA TAGCCAATAG TGCCCATGGC CCTTAGACTA GGGCCATTTT CCTCATGGGG
  TGGATTCAGA CATGACAGGT AAGGAGGGGG ATAGCAGATG TAACTCTTCA ACCCGGTAGA
  AAAGAACCAA GGCTGCAAAC ATGACATACA GCAATACTTC TGGAGCCGCA GCGCCTGAGA
  AACTCTTATA AACTGTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251694	ENSMUSSNP3364482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48258418					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	789 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	1116 bp upstream
Rr100958	regulatory region 100958	157 bp proximal
Tssr37060	transcription start site region 37060	1130 bp upstream
Tssr37061	transcription start site region 37061	1142 bp upstream
Tssr37062	transcription start site region 37062	1175 bp upstream
Tssr41531	transcription start site region 41531	1027 bp downstream
Tssr41532	transcription start site region 41532	1133 bp downstream
Tssr41533	transcription start site region 41533	1219 bp downstream
Tssr41534	transcription start site region 41534	1337 bp downstream