rs48258799 SNP Detail

Summary

• ID
  rs48258799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37873816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTCCTG TCTTTGCCTC
  TGGAGGGCTG TGAGGACAGG CAAACTGCTC TCACCCACAT AGCTGGGGAC CCAAACTCTC
  CTCCCTGTAT ACTCTTTATT TGAGAAGCCC CATAACTTGT GCCTTATTTA AAAAAACAAA
  AACAAAAAAA CAAAAAAAAA AAAAACAAAA AGCAGGAGGA TTTGCATGCA ATTACAGTAG
  R
  ATGGGACATG GATGGGAAAC AGGAGGAGGA AGGGCTTCAC CACCAAAGTG TTCTCCCTTT
  GCTCCTCTGG CTTGTTTACA TTTTTAAAAA TCAACCTGTG TTACTCACAA CCTGTGGTAC
  TTGTGTTTCC TCATTGTTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61764387	NES17699266	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48258799					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764387	NES17699266	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37873816 () rs orientation: forward

Symbol	Name	Function Class
Rr271585	regulatory region 271585	816 bp distal
Rr279067	regulatory region 279067	27 bp distal
Rr283303	regulatory region 283303	386 bp proximal