rs48259119 SNP Detail

Summary

• ID
  rs48259119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:86987497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTATGGG CCTGTGCTTC
  TCACAGGTAT CAGAAGCATT CTTAAGGAAG TAAAGGCGAG GATGTGTCTC ATAAGAAAAG
  CACAACAAGG CTACTTGGCA TAGTTTTAGC ACATGCCAGT TATCTTTCTG AAATCTGTAA
  AACTCAGGTA TTTCCAGAAG ACCGTCTTTT TCTCAGTGTC CCTGTCAGCA GGAGAATCAA
  Y
  AGTATCATTA GGAAGAGCTC ACATAGACTG AGTGCAAGTG CGTCAGTGTG GCGTGGTGTA
  GTTCTCACAA GTCCTATAAA AAGCAGGTAG AACTGATGCC CACTGATGGT TGCTTTCATC
  TGCGGAAACT GACGTGCAGA CAGAGTCAGG ATCTGTGATT ACCAAACAGC AAAGCTGTGA
  TTCAAAGGCA AGTCAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ
ss62495637	NES17274118	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ
rs48259119					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62495637	NES17274118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:86987497 () rs orientation: forward

Symbol	Name	Function Class
Diaph3	diaphanous related formin 3	within coordinates
Rr297552	regulatory region 297552	696 bp distal
Tssr4496	transcription start site region 4496	943 bp upstream
Tssr129931	transcription start site region 129931	973 bp upstream