rs48259129 SNP Detail

Summary

• ID
  rs48259129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:14621256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGTCTG GGATTAGGAG
  ACAGGAACAT CTGGGATAGT GGCCTGTGTG TACTTATGAG CCAGCAGGAA ACTGGAAACG
  GGTATCTAAT ACTCCCATGG AACTAACAGT GAATAGGGAG AAAGGAGGAA GATGAGTCCA
  CTGGGGACCG ACAGCAACTG TCCACGGCCA GGAGGGAATG AATGAGGAAA TGGAGGTACA
  Y
  GGAGGCCATT ACAAAGTAGG AAGGAAGGCT GGAGAAACCC CCCCCCCCCC CCGATTCTGG
  GCAAGGAGGG ACTTCGGCCA GTTAAAAGAG GCTGAACTCT GAGCAGAGAC CAGAGTGAGT
  TGGGGGCGGG GCACCTGAAG TCAAGTGTCC ATGTAACACA GGAGTGAGTA CTTCACAGAG
  AGCAGAAAGG GGAGAACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541450	NES16554295	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48259129					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541450	NES16554295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14621256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr522525	regulatory region 522525			36 bp proximal
Smoc2	SPARC related modular calcium binding 2			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Tssr142738	transcription start site region 142738			1958 bp downstream
Tssr142739	transcription start site region 142739			1748 bp downstream
Tssr142740	transcription start site region 142740			1722 bp downstream