rs48260413 SNP Detail

Summary

• ID
  rs48260413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGATGTT TGTATTTGCA
  TGGAAATGTT TTTACAGCAA TCATTAATAG CCTAGTCAGA CTGAGCTATG AGACGGACTC
  TTCAATCACT CTGTTCCTCA TAATCGCAAA GTAAGAAAGC TGGGTAGGGG CAGGCCTTCT
  AGTCTGGAAC GTAATCTCCT CAAGAGGTGA AGCGGGATTC TGGGTACAAA GTAGCAAAAT
  R
  CGAGCTGCGC GGAACCTTTT AGATTCTCGA CTAGTGTTCA GTGATTCCGT GAACTTTGCG
  GATATGGAGA ACAGAACGGG GCTAGAAAGA TAGGCTTGGG GATGGGCACA GCTCGTCGCG
  AGCCTGATGA GAATCGGGTG TCAGACTAGG AAACTAAGAG CCCATCATCA CCCTCCCCGC
  CCCCCAGGCA CAGTCAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62747672	NES17340459	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48260413					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747672	NES17340459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	62 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	19 bp proximal
Tssr144685	transcription start site region 144685	256 bp downstream
Tssr144686	transcription start site region 144686	124 bp downstream
Tssr144687	transcription start site region 144687	104 bp downstream
Tssr144688	transcription start site region 144688	29 bp upstream
Tssr144689	transcription start site region 144689	186 bp upstream
Tssr144690	transcription start site region 144690	221 bp upstream
Tssr144691	transcription start site region 144691	241 bp upstream
Tssr144692	transcription start site region 144692	297 bp upstream
Tssr144693	transcription start site region 144693	345 bp upstream
Tssr144694	transcription start site region 144694	380 bp upstream
Tssr144695	transcription start site region 144695	428 bp upstream
Tssr144696	transcription start site region 144696	445 bp upstream
Tssr144697	transcription start site region 144697	1135 bp upstream
Tssr148130	transcription start site region 148130	243 bp downstream
Tssr148131	transcription start site region 148131	1687 bp downstream
Tssr148132	transcription start site region 148132	1710 bp downstream