rs48260649 SNP Detail

Summary

• ID
  rs48260649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28667109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTAGTC ATTTTTTAAC
  ACTGCCAGCA TTAGGATCAC CCACAGAGCT TTTAAAATGC TGTAGGTGCC TGACTCCAAC
  CAGAGGGCCA GGATGAGTCA GCATCCAGGC ACCAGGAGTC AGAGCACACT GCACGGTCTC
  CCAAGCAGCA GATGTGGCTG GAGCCACCGC TTCTCTCCTT TCCATCACTG TCCTTTCACT
  Y
  TACGTTGGGA GAGATTTTTG ATGATGGAAT TTCTAGGTCA TTATTTGGTC AGCAGCTATG
  GACAAATTTT AGTGTGTCAC AGAGACCTTT TAGACATTAG TAGTGTTTTT CACCATCTTT
  TATTATGTGA TTGCTCACTT CCCTGAGTAC TTTGTCTGTA ATTTTGTGAC TATAACTTCA
  AACTCTTCTG CAGATGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60561140	NES16570406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48260649					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561140	NES16570406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28667109 () rs orientation: forward

Symbol	Name	Function Class
Fkbp5	FK506 binding protein 5	Intron
Gm22146	predicted gene, 22146	within coordinates
Gm55779	predicted gene, 55779	987 bp downstream
Rr524560	regulatory region 524560	1625 bp distal
Rr524561	regulatory region 524561	1104 bp distal
Rr524562	regulatory region 524562	350 bp proximal