rs48261798 SNP Detail

Summary

• ID
  rs48261798
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCAGGCCCTC TGCCACGGAA ATGCTTCTGA GGAGACTTTT
  CCGGGTCCAG AAACAGCTAG GACGCAGAAA CCGAAAGGTA GAAAGTTGAT TGGTGGAAGT
  C
  CCTGTCATTC CGGCCTGGAT CTTAGGAGCT GTTCTCCTAG ACCCGCCCAC TAAACCATAC
  TTAGGGTCAC GTGGTTCCCC CAAACACTTT GTGAGCAAGC G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145304142	ENSMUSSNP4634829	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48261798					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533891 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	73 bp upstream
Gm53992	predicted gene, 53992	12 bp upstream
Rr523017	regulatory region 523017	84 bp distal
Rr523018	regulatory region 523018	within coordinates
Tssr146602	transcription start site region 146602	101 bp upstream
Tssr146603	transcription start site region 146603	64 bp upstream