rs48261933 SNP Detail

Summary

• ID
  rs48261933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATCCCTA AAGATGGAGC
  TGCCTTGTAG ATATTTTGGC TCAGATGGTA TAAGCAGTAC ATTTAATGCT TAAAATATTT
  TCATAAGCAA CCGGGGGGTG AAGGGAATGA CTCACTTGGT AAAGTGTATG CTGTGCAGAC
  ATTAGGACCT GAGTTTAGAC ACCCAGCACC TACATCAGGG AGCAATCCAT GCCTGTAATT
  Y
  CAGTGGTCAG GGTCGGGGAG GGGGAACCAG GAAGATCCTG GGGCTCTCTG GCTAAATCAG
  TGGGCTCCAG GTTCACTGGG AGACCCGGGC TCAAAAAGTA AGGTGGAGAA GCAATGAGAA
  AAAACCCTTG ATGTCAACCT CTGGCCTCTG CATGAATGTG CATCAGGTGG TGGAAGCAAG
  TGTTCAACTG TGTGCACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132681504	ENSMUSSNP3637258	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323821014	CHEV_11_96405439	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48261933					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434951 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	352 bp distal
Rr252639	regulatory region 252639	1651 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1691 bp downstream
Tssr104543	transcription start site region 104543	594 bp upstream
Tssr104544	transcription start site region 104544	1248 bp upstream
Tssr104545	transcription start site region 104545	1301 bp upstream
Tssr104546	transcription start site region 104546	1309 bp upstream
Tssr104547	transcription start site region 104547	1351 bp upstream
Tssr104548	transcription start site region 104548	1445 bp upstream
Tssr104549	transcription start site region 104549	1458 bp upstream
Tssr104550	transcription start site region 104550	1516 bp upstream
Tssr104551	transcription start site region 104551	1544 bp upstream
Tssr104552	transcription start site region 104552	1565 bp upstream