rs48262400 SNP Detail

Summary

• ID
  rs48262400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131566198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAGAGC AGGCACACTT
  CCTGTAAGTG CCAAAAAACT GTATGCCCGT CTCACAACTT CATTTGTTCC TCAGAACTGC
  AGATGCCCTG TGTGACTCCA GAAGCGGTTA GAAAGATCAG GCGTGGTTAT CTCCATTTGC
  AGCTGAGGTG GCCAAGAGAT AAGAGTTGCT TAAAGTCGGA GTTAGCAAAC AACAAAACGG
  K
  GTTTCCACAC AGAGCTCAGC TTCGGAGCCC AACCCATCCA CTTACTACAA GAAAACGAAA
  TTCTTGACAT TTTGGGTTAT ATCCGGTAAC TTCAAAGGTA AGTGGTTTAT AATCTTGTTA
  CAAATTTTTC TGGGAAATGA CAATCTCATG CTTTAGTTAA CAAAAATCCA TTTATTATGA
  TAATTTCCTC ACAGGTAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145480063	ENSMUSSNP5707317	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48262400					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131566198 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr12195	regulatory region 12195	798 bp distal
Rr28482	regulatory region 28482	within coordinates
Rr366988	regulatory region 366988	63 bp downstream
Tssr8635	transcription start site region 8635	164 bp downstream
Tssr8636	transcription start site region 8636	122 bp downstream
Tssr8637	transcription start site region 8637	97 bp downstream
Tssr8638	transcription start site region 8638	56 bp downstream
Tssr8639	transcription start site region 8639	within coordinates
Tssr8640	transcription start site region 8640	25 bp upstream