rs48262598 SNP Detail

Summary

• ID
  rs48262598
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98157081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAGAATGTGT AAAAGTTACA ATTAGAAGAC AGACCAGAAG
  CCAAGTGTGG TGGCGCATGC CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGCAGATTT
  C
  TTAGTTCCAG CCCAGCCTGG TCTACAAAGT GAGTTCCAGG ACAGCCAGGG CTATACAGAG
  AAGCCCTGTC TCCAAAAACC AAAAACCAAA AACGAAAAAA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148453845	ENSMUSSNP6560313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48262598					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98157081 () rs orientation: forward

Symbol	Name	Function Class
H1f7	H1.7 linker histone	1907 bp upstream
Rr391174	regulatory region 391174	69 bp downstream
Tssr136230	transcription start site region 136230	1888 bp upstream
Tssr136231	transcription start site region 136231	1768 bp upstream