rs48262712 SNP Detail

Summary

• ID
  rs48262712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76545858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGCACTC TCTTCTTGGT
  GGCACCTGAC GAGGCTTCCC GGTAGAAACG AGTCACGTAG CTCAGAGCAT CGTTGACGTC
  TGTGGCGTCG TTGATGAAAT CCATGCTGTC CACAGAGCTG GCCAGCACTG TGTAATTCTG
  TAAGAACTGA AGAGCCGCCC GACCTGGCTG TTGCTGCCCC TGGCCACTAT ACTGTACCAC
  R
  GCCACCCGCA CATCCTGGGA AGGATCCGCC CTGCCTGCTG ACAGGAATCG CTCAGCTAGG
  CGCTTGGCGA AGACCTTGGT GGTTTCGAAG TTGTGGCTGC CGACACTGGC TGAGCTGTCT
  AGCAGGATGG TGATGTCAGC CGGGGAGGAG AATGTGACTG TGGGGCAGAG AGGGTGGCCT
  GAGACTAGGC AGACTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61288977	NES16903937	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48262712					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61288977	NES16903937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76545858 () rs orientation: forward

Symbol	Name	Function Class
Col6a1	collagen, type VI, alpha 1	within coordinates
Tssr98195	transcription start site region 98195	905 bp upstream
Tssr98196	transcription start site region 98196	668 bp upstream
Tssr98197	transcription start site region 98197	513 bp upstream
Tssr98198	transcription start site region 98198	443 bp upstream
Tssr98199	transcription start site region 98199	358 bp upstream
Tssr98200	transcription start site region 98200	291 bp upstream
Tssr98201	transcription start site region 98201	1628 bp downstream