rs48264116 SNP Detail

Summary

• ID
  rs48264116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:72005857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACTCT GCCCCTTTCA
  CCAATCACTG GGCAAAGCCC AGTTGCTATT ACAACTTGTT GAGTTAGGCT CCAGAGTCTA
  GCTATCTTGA TTTCAGTTGA ATCTGCTCAC TGAAGTACCA TTCTAGGCTA GAAACGAAGA
  AATAAGTAAA ACTGAAGGCA AGAGAGGCCC TGGCTATACA GCCTGCTTTG TGTGCCTACT
  R
  TTTAGTTACC AGCTAAGCCA ATTAAATTAT CCAATACCGC ACCATGGTTA TTTACATAAT
  TAACACTAGA ACAGTAGAAT AAACAAGTTT GCAAAGTAAA TGGAAAAGCC AGAGCAGATT
  CTACAAAGCC CAGTTCACTA TACATTTCAT TATTTCCATA GCTGTGTTAA CAGCCATGGG
  ACAGAACCAA CTAGGCAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420171	NES16798025	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48264116					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420171	NES16798025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72005857 () rs orientation: forward

Symbol	Name	Function Class
Rr682691	regulatory region 682691	1107 bp distal
Rr682692	regulatory region 682692	197 bp distal
Rr682693	regulatory region 682693	1239 bp proximal
Tcf12	transcription factor 12	Intron
Tssr90473	transcription start site region 90473	801 bp downstream