rs48265401 SNP Detail

Summary

• ID
  rs48265401
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124021143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCACAC AAAACTCCAA
  TTTCTTGGCC AATTCCCATT CCAGAAAAAG TCAAGATACA AATGGAGCCA TGTTTTTAAA
  TAGTCATAAA TTCTCTTCCT TTCTTCTACT TTGCGATCCC CTCCAGAAAA GATCCCTGCA
  AGACTTCGCA AGTGTTATGA AGTGGAGAGT GTTTGCTATC TATCTCTCTG CTCTGTGGAA
  M
  ACTTACTGTA ACAGAGTTTA TCACAAACAA TCCCCAGGAA TAGAAGACAC TGTGAGAGTA
  GGAGAAGCCA TCACATACAT TTACTTCCTC ATACTTATTG GAAAAAAAAA TATGGATAGT
  CTAGTTCAAA GTGGGGATGA ATCAAATACA GGTACAGATA TTCAATAGGA AACAATTTCA
  TTTTATCTTA TTGATTTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60445840	NES15938650	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	C	A	A	A		A	A		A
ss135782652	ENSMUSSNP3765427	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C				A
ss320926431	CHEV_3_123930412	CHEVERUD	SCREENING_POP	f	SNP										A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48265401					SNP	A	A	C	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445840	NES15938650	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124021143 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1294 bp distal