rs48265446 SNP Detail

Summary

• ID
  rs48265446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46739289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATCTCA TTACGGATGG
  TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCAGGA CCTTCAGAAG AGCAGTTGGT
  GCTCTTAACC ACTGAGCCAT CTCGCCAACC CCCCATTTTA CACTCTTAAA CTAAGTTAGA
  AATATGTGGC TGGTGTTTAA CAGATGTGAT AATCGTATGA GCAGGTTGTA GACCAGCTGT
  R
  CGTAGGGGCA CATTTTGGGA CTTATAGACC GGGATGTGAG TTCTATATAT ATGCACAGGG
  TTCTTCATGG TGCTTGCATA GCAGTTATGT GCCTGGCACT GCGCTGTTGA GATTAACTTG
  CCCAGTTCTC ATTACAACCC TGTGCCATGG AGACTGTTAC CATGTTACTA CTTCCAGTAC
  AAACAAAAAA TATGGTTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145699432	ENSMUSSNP74557	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48265446					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46739289 () rs orientation: forward

Symbol	Name	Function Class
Crip3	cysteine-rich protein 3	563 bp upstream
Rr527733	regulatory region 527733	351 bp proximal
Rr527734	regulatory region 527734	599 bp proximal
Tssr144853	transcription start site region 144853	554 bp upstream
Tssr144854	transcription start site region 144854	567 bp upstream