rs48266149 SNP Detail

Summary

• ID
  rs48266149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:97374030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAATTTC TCTTCTCATT
  TACTCCATGT GTTTTTCACA GGAACAAAAA AGAAAGGAAT GATCTCATTA CCAGTTTTGG
  ACAAAGAAAG CCATGTTTCT CAAATCAGAT CTTTTCTGTC TTGGTTTTCT TGAATACTCT
  GCAAATTTCT TTCCCAGCTC TTTGGCCTCA AGGCCTGCCA AAGAGCCCTT GTTTCCCAGA
  R
  CTCCCTTTAG GCTTTTTGCC TTCCTAGCAG TCCCCAATTC TGCTCTTTGT CTGCCTCTCC
  AGCCAGTCCT CACACTGGTC CTTTCCCAGC CTGTCTTTGT GTTCTTACTC CATGGGAACT
  CTTCCATGGG CTCCTCATGT TTATGCAGTC TAGACCAGAG GAGAGCCTTT TATTTATTTC
  TTGGACCCAG CAGGGGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146996108	ENSMUSSNP4597066	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48266149					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:97374030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrrc4c	leucine rich repeat containing 4C			Intron
				mRNA-UTR
Rr561454	regulatory region 561454			within coordinates