rs48266722 SNP Detail

Summary

• ID
  rs48266722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52694301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATGCCA ACAGTCGGGA
  GGTGGAGACA GGAGGATCAG GAGTCCAAGG GCATCCTTAA CAGTCTAGTG CATTCAAGGC
  CTGCCTGGCT GTAAGAAACA CTGTCTCCAA CAAACAAACA AACAAAAAAG GGTAGACAGA
  GCCAAGATAA TCTTTAGAGG ACTTCCAAGA AGAGCCACGG TCCTGAGTGA CAAGAAGACC
  R
  GGGAAGCATG AAGAGGACAG GGTAGCAAGG CTCCAAGCTA TCCACCATGA AGCTATCTCC
  TCACAGCCAT TGAAGCAACA GTTGCACCCA AGTAGCACTC GGCAGAAAGG CAGAAAGGTT
  ATCCAGAAAC ACCTACAGCA GATGCACAGG ACCTGGGCAC AGAGGAGGCC TGAAGCAGTC
  ACTCTCCAAT CTGACTGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61797316	NES17723958	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48266722					SNP	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61797316	NES17723958	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52694301 () rs orientation: forward

Symbol	Name	Function Class
Rr272475	regulatory region 272475	1101 bp distal
Rr284095	regulatory region 284095	within coordinates