rs48269994 SNP Detail

Summary

• ID
  rs48269994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTTTAGA AAAAATGATA
  TCTATAAAAT ACCATAACTA GATAGTTTAT GATTGAAGAA GAAAGAACCA TTAACATGTC
  ATTGTATGTA TGATAGACTA GATATTGGGA ATGAAAATGG GTAAGCAAGC ATGCATGGAC
  TGTAGTTCTT CCCCTGGGAG ATCCACAACA ATGACCTTGT GAGACATTAT AGTGAGGTTC
  R
  GGCAATGAGT TTAAAGGTAT TCTGTGATTT AAAATAGTTC CTACAATGAT AGCTACACTT
  AAAATCAGGT GAGAATTTAG ATCTCATTTT GAATTTTCGA ACAAAAAATA AATTCTGAAG
  GAAAATACAT GAATGTTTTT TGTTTGTTTG TTTTTTGAGA CAGGGTTTCT CTGAATAGCC
  CTGGCTGTCT TGGAACTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320936346	CHEV_3_125129818	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48269994					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220549 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	702 bp distal