rs48270303 SNP Detail

Summary

• ID
  rs48270303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80076377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGCAGCT GGGCCAGTAT
  ATGCAGCTGT GACATCTGGC AGATGGAGAT GCTGCCACAC AGAACAGGAA GGGCTCCTAC
  CTGTGGGCAT CCTGTTTGGT TATTGGTTTG TAGGATGTTT ATTGCCTTGA TGTTCAAGTG
  TATTTTGAGG GGCGGGGTTA GGACTTGGTG GTTACAGCCT GCTGGGAGGA TCAAAGGTCC
  R
  GCTACCGAGC CAACTGCTTG GAAGTCCAGG GCCTTTGAGT GGTCTGAACT TGGGGACTTT
  CTCAGGGAGA TGGAGGCTAT CCTGAGGTGT AGACATGGGG AGAGAAACCT CCATGAGTGT
  GGAGTATTGT GTGCAAAGCC AAGCTAAAGC ATGGCGACCC CCTGCCATGC CACGTGTGTG
  CTCAGAACTC TGCTCCGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569468	NES17022493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48270303					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569468	NES17022493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80076377 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505907	regulatory region 505907	1771 bp distal
Rr505908	regulatory region 505908	31 bp distal
Rr505909	regulatory region 505909	336 bp proximal
Rr505910	regulatory region 505910	837 bp proximal
Tssr4660	transcription start site region 4660	934 bp upstream
Tssr132185	transcription start site region 132185	298 bp downstream
Tssr132186	transcription start site region 132186	within coordinates
Tssr132187	transcription start site region 132187	824 bp upstream
Tssr132188	transcription start site region 132188	877 bp upstream
Tssr132189	transcription start site region 132189	897 bp upstream