rs48272258 SNP Detail

Summary

• ID
  rs48272258
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25104026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAAGTGTG TTATTCTTCC CAGGCAGTCT CTCATGGCAG
  CTAGGATGGT TCAATGTTAC CCGCTTAAAG CTCAGCACTG GGATCCACTG CACACTGTGC
  A
  GCCTTAGACC CTTGGCTTGA GTGAGGGCCC GTAGGGAGGG TTCTCAGAAG GGAGATCCCT
  TCCTATCTAA GGAGTGCCTG ATGGCTTCAC AACAAATGC                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145368933	ENSMUSSNP5946232	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48272258					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25104026 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	753 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	1215 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1591 bp upstream
Tssr143106	transcription start site region 143106	910 bp upstream
Tssr143107	transcription start site region 143107	923 bp upstream
Tssr143108	transcription start site region 143108	950 bp upstream
Tssr143109	transcription start site region 143109	968 bp upstream
Tssr143110	transcription start site region 143110	1637 bp upstream
Tssr143111	transcription start site region 143111	1826 bp upstream
Tssr146788	transcription start site region 146788	807 bp downstream
Tssr146789	transcription start site region 146789	820 bp downstream
Tssr146790	transcription start site region 146790	848 bp downstream
Tssr146791	transcription start site region 146791	884 bp downstream
Tssr146792	transcription start site region 146792	1252 bp downstream
Tssr146793	transcription start site region 146793	1331 bp downstream