rs48272801 SNP Detail

Summary

• ID
  rs48272801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:106804749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAGAG CAATGAGTCT
  TGCAAGTTGT TCTGACTTAT GGAAGCCTTT GCAATGGTGC TTGCATATAT GTGCATACTC
  TCATAGGCAT GAATAAATGC AATAAAAAAT GACAAAAGAG CTCAGGCCCA AAGAAGTTAA
  CCCTTCAGCT GCAATATTCA AAGTATCTTG TTCTGTAGAT ATCATGCAAC AGTTTTTCAG
  Y
  GTTGTATTTC TCCCTATCAT CTTCTAAAAA TAGATATATT TTCATCATCT TCTTCTGCTC
  CATAACCCTC TCAGAGTCTC TCCCTCCCTC TCTACCCAAC CTCATGATGT TCTCTCTCTG
  TCAAAAAATT CCAACCAAAC AAGGAAAACA AAAAACTCTT AAGCAACAAC AAAAAAGTCA
  AAAGGGATAA ACAAAATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60780035	NES16424368	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48272801					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60780035	NES16424368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:106804749 () rs orientation: forward

Symbol	Name	Function Class
Rr18766	regulatory region 18766	748 bp distal
Rr371817	regulatory region 371817	878 bp downstream
Serpinb5	serine (or cysteine) peptidase inhibitor, clade B, member 5	within coordinates