rs48272822 SNP Detail

Summary

• ID
  rs48272822
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:48731948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATATAG AGAATGCTTC
  TGTGTGCTGA GTCTTATGAA GCACTTTCCA TAAGACTTCA CCTCAGTGAT CTTGGTCTTT
  TGTTTTTGTT TGTTTGTTTG GTTTTTTTTT GGGGGGGTGA GGGGGTGTTG TTGTTTGGTT
  TATTTTGGTT TTGGTTTTTA GTAAGTTGTT AATCATCACT AATTTCTCAG CTCCTGTTAA
  S
  CAGTGTCAAT TGTTGTTATC AGGAACTGGC TTGGCAGATC GCCTCCAAAC ACAGTGACAT
  CATCCATAGA TGACGGGACA AGAGCATCTG TTGCCACGGC AATCACATAC ATTCCCAGAG
  TCCACTTCCC ACCTGTGAGT GGTTACATCA CAGCATAAAT AAAAGGTAGA CCCTTCCTGA
  CCTTCACCCC TTTTTTCTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52271685	NES15309086	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48272822					SNP	G	G	G	G	G	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52271685	NES15309086	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:48731948 () rs orientation: forward

Symbol	Name	Function Class
Gm67268	predicted gene, 67268	109 bp upstream
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates