rs48273654 SNP Detail

Summary

• ID
  rs48273654
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29892811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC TCCCGCCCCC CATCAGCCCC
  K
  ACTCCTCCCA GGGATCAGTG CTTGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148668613	ENSMUSSNP3921398	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322132184	CHEV_7_30978405	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48273654					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29892811 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	357 bp distal
Cpgi18782	CpG island 18782	401 bp proximal
Cpgi18783	CpG island 18783	1093 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	218 bp upstream
Rr400233	regulatory region 400233	1649 bp upstream
Tssr65662	transcription start site region 65662	543 bp upstream
Tssr71696	transcription start site region 71696	456 bp upstream
Tssr71697	transcription start site region 71697	435 bp upstream
Tssr71698	transcription start site region 71698	404 bp upstream
Tssr71699	transcription start site region 71699	278 bp upstream
Tssr71700	transcription start site region 71700	243 bp upstream
Tssr71701	transcription start site region 71701	19 bp upstream
Tssr71702	transcription start site region 71702	408 bp downstream
Tssr71703	transcription start site region 71703	614 bp downstream
Tssr71704	transcription start site region 71704	708 bp downstream
Tssr71705	transcription start site region 71705	766 bp downstream
Tssr71706	transcription start site region 71706	1634 bp downstream
Tssr71707	transcription start site region 71707	1646 bp downstream
Tssr71708	transcription start site region 71708	1660 bp downstream
Tssr71709	transcription start site region 71709	1835 bp downstream