rs48274260 SNP Detail

Summary

• ID
  rs48274260
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73421409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAAACT CAATACAAGG
  GAAATAAGAG TGGAAACCAA TAAAATTGAA AACAGGAAAG AAAAAAAAAC CCAACAGAGA
  AAGATTAATA ACAGGAAAAC CTGGTTCTCT GAGAAGCCCA ATAAAATGGG TAAGTGTCAC
  AGACAGGAGG AAAGTATCCT GACTTTGCCT GCAGACCAAG AGTTGTATCT TAGACTGAAC
  S
  GTGGCTGCAG TCTGTGCTTG ACCTTAATGC CACCCAATCT GACTGCAGCG GCCTCCAGTG
  GCCTCCCCAG AGTTAAGGGG AGAAAAGTTG GGAGCCCTTT GGCACCTTTT CTTCTGCAAT
  GGCGTCCTTC TGGCCTGAAC TGTGGGCAGC AGTCAGTTTT GGCCTTGCTC TCTTTTATTT
  CATCCTTAGT CAGTGGGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137886675	ENSMUSSNP1167768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48274260					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73421409 () rs orientation: forward

Symbol	Name	Function Class
D830013O20Rik	RIKEN cDNA D830013O20 gene	within coordinates
Rr257323	regulatory region 257323	within coordinates
Rr261220	regulatory region 261220	1192 bp proximal
Rr264130	regulatory region 264130	13 bp proximal