rs48276804 SNP Detail

Summary

• ID
  rs48276804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4503965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAAAGA AATCAGCAAT
  TAGCTACTGG ATTAGGCATT CTTAGAACAA CATGAAGACT AATCCTATTC TGGGTTCAAA
  AAGCAAGACA TGTGCTGGGC ATACTTTGTA GAGAAAAAAA ATAGATATTT CCTAGTAGTT
  GCTAATCATT GGCCTTTAGA ATAGAAAAAA GCATCCGCTG TGTAATAGTT ACCTGTGGTT
  W
  TTCACAGTTT CCTTGAGCTG TCTGCTGATG TCGTAGAAGC TGGTACAGCT GACAAACTTT
  TGCCACTAAT AGACTCATGC TCCTGATAAT GGAAGGAGTG AGGAGTACAG GAATACAGCC
  AGGCAGGTAG CAAGTAAAGA GATCCAATAT AGGATCACCA AGTATCGAGG TCTAATGTCT
  TCTCCGGGAG TGACTGAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63636392	NES17047666	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48276804					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63636392	NES17047666	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4503965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7918	CpG island 7918	1498 bp distal
Dnaja3	DnaJ heat shock protein family (Hsp40) member A3	within coordinates
Rr510906	regulatory region 510906	1976 bp distal
Rr510907	regulatory region 510907	1681 bp distal
Tssr136865	transcription start site region 136865	1964 bp downstream
Tssr136866	transcription start site region 136866	1865 bp downstream