rs48277021 SNP Detail

Summary

• ID
  rs48277021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGAGGC TGCTAGGGAC
  CATGGGAAGG GAACCGGGTC AGCGGAATGA TGGGTGAGTT GGCTGGTAGT GTGGACATCT
  TGTGGGCAGA GGATCCTTAC AAGGACTTTG GAATAGAGTG AGCCCTGTCC CTCTGAAGTG
  GCGGAACTAA AGGAGACCAG GAAAGAAGAG ATGGCAGGGG CTGGACGAAT CTGGTTTACT
  Y
  GGTGTGAACG AGAGACGGAA TCTAACAGTG TCTGGAAGCG TCAAGGGATC TCAGGGCTTG
  GGGCGCCTGG AAAGTTGGGC CTGGTTGGTG GTAGTACATG TCCTTCAGAT TCTGCTGGGA
  CCTGCTGAGA AGACTGGAAT GGAGAGAGCC AGCTGCCCCC TAACTTAGTT TCCTTTTAGT
  TCTCATCACC CCCTGAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ
ss60803393	NES16472599	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ
rs48277021					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803393	NES16472599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763101 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	500 bp distal
Rr419293	regulatory region 419293	936 bp distal
Rr419294	regulatory region 419294	501 bp proximal
Rr419295	regulatory region 419295	1061 bp proximal
Rr419296	regulatory region 419296	1529 bp proximal
Tnnt2	troponin T2, cardiac	991 bp upstream
Tssr9005	transcription start site region 9005	1017 bp upstream