rs48277270 SNP Detail

Summary

• ID
  rs48277270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3624377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGTAAT GAAACCCTAA
  ACCTGTACAC TGAGGCAAAT CATAGCAGGG GATTGGTGTT GGGGAGATGA CATGGAGAAA
  CAAGACCACC CTGAAACTCC ATTTCCTAGG ACTGGGCTGT AGCAGAAATC CAGAAGACAG
  GAAAGAAAGT GCAGGAAAAA GATAGGAAGC CTTGAGGCTG TGGTTCTCAA CCTTCCTAAT
  R
  CGGTGGCCCT TTAATACAGT TCCTCATGTT GTGACCCACA GGTTGGGAAC CACTTCCCTA
  AGATGCCCAC TGAACACAGT TTTTAGTGAC CACCGCTCTT AAGGAAATTG CTTAAAGCAA
  GATTGCCAAA CAAACCCTTA CTTGGGTTCA AGTTCTTTCT GATCACGCCA ATAAAAATAA
  CTTCAAGGTA TGCGAGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146262545	ENSMUSSNP3571091	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48277270					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3624377 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Rr550923	regulatory region 550923	202 bp proximal