rs48277397 SNP Detail

Summary

• ID
  rs48277397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12850168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATAGAGGCT CTCAGAGTCT GGGGCAGCTG TTGCAGAGGC
  TGCATGGGTC TGTGCTAAGT CCTTTTCTTA CATAAGATGG TTGTTGACTT ACTATTTTGG
  R
  GGGAGTCTGA ACTGTGGGAG TGAGGGTGTC TCTGACTCTT GCCTGCTCTT AGGACCCTTT
  TCCCTCTCCT GGGTTGCCTC ACCCAGCCTC GGTGTCAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146806603	ENSMUSSNP534490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48277397					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12850168 () rs orientation: forward

Symbol	Name	Function Class
Tssr92372	transcription start site region 92372	381 bp upstream
Tssr92373	transcription start site region 92373	1279 bp upstream
Tssr92374	transcription start site region 92374	1805 bp upstream
Tssr92375	transcription start site region 92375	1894 bp upstream
Tssr96740	transcription start site region 96740	258 bp downstream
Tssr96741	transcription start site region 96741	1171 bp downstream