rs48277587 SNP Detail

Summary

• ID
  rs48277587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93642606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCACCTG CTGGACACAA
  GTATACGTAG CCGCAACAGT AAGGCCTGCT TCTCAGGTGC AAGATAAGCC CCAAAGGGAC
  AAATACAAAA TTAGAAAGAT GTATACTTCC AGCTTGTCTG CTACATAGAA CAAAAAAACA
  ACCCTGAAAC CCACCTAAAT GCTCAAGAAA CAAAAGGAGG CCTGGAGAGA TGGCTCAATG
  R
  TTAGGAGCAC TGACTGCTCT TCCAGAGGAC CCAGGTTCTA ACCCCAGCAC ACACATGGGG
  GCTCACAACC GTCTGTAACT CCAGTTACAG GGGATCCAAT GCTCTCTTCT GGCCTGTGAG
  GATACCAGGC AGACGTGTAG TACACAAACA TACATGAAGG CAGAACATCC ATACACATTT
  AAATAAGTTA AAATTTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146948915	ENSMUSSNP1281253	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320397098	CHEV_2_93652418	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48277587					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93642606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11950	CpG island 11950			1209 bp proximal
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561284	regulatory region 561284			182 bp distal
Rr561285	regulatory region 561285			1116 bp proximal
Rr561286	regulatory region 561286			1286 bp proximal