rs48277630 SNP Detail

Summary

• ID
  rs48277630
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28853511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA GTCTTAAACC CTGTAAGATT
  S
  TGAAGTGTGG TTTGGAGAGA TGGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss60987112	NES16140801	PERLEGEN	MM_PANEL2	f	SNP		G	G		G	C
ss148642703	ENSMUSSNP3685104	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322127376	CHEV_7_29939105	CHEVERUD	SCREENING_POP	f	SNP				C			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs48277630					SNP	C	?	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60987112	NES16140801	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28853511 () rs orientation: forward

Symbol	Name	Function Class
1110035H17Rik	RIKEN cDNA 1110035H17 gene	1594 bp upstream
Cpgi18740	CpG island 18740	1213 bp proximal
Fam98c	family with sequence similarity 98, member C	within coordinates
Rasgrp4	RAS guanyl releasing protein 4	125 bp downstream
Rr644490	regulatory region 644490	121 bp proximal
Rr644491	regulatory region 644491	1104 bp proximal
Rr644492	regulatory region 644492	1616 bp proximal
Tssr65599	transcription start site region 65599	1557 bp upstream
Tssr65600	transcription start site region 65600	1585 bp upstream
Tssr65601	transcription start site region 65601	1658 bp upstream
Tssr71610	transcription start site region 71610	1511 bp downstream
Tssr71611	transcription start site region 71611	1536 bp downstream
Tssr71612	transcription start site region 71612	1631 bp downstream
Tssr71613	transcription start site region 71613	1850 bp downstream
Tssr71614	transcription start site region 71614	1877 bp downstream