rs48278043 SNP Detail

Summary

• ID
  rs48278043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153065849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCA AATGCACCCG CTTCATCTTA
  R
  GTGTCACACC TCAGTTTGGG ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147988183	ENSMUSSNP1965511	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48278043					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153065849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12481	CpG island 12481	1061 bp proximal
Tspyl3	TSPY-like 3	within coordinates
Tssr26887	transcription start site region 26887	1104 bp downstream
Tssr26888	transcription start site region 26888	1448 bp downstream
Tssr26889	transcription start site region 26889	1467 bp downstream