rs48278636 SNP Detail

Summary

• ID
  rs48278636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45570049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT TTTGGGAGAC AGAGGAACGG
  R
  CAGGACTAAC AGTGAGCTGG TGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002549	NES16125148	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	A	A	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48278636					SNP	A	G	G	G	G	A	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002549	NES16125148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45570049 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm45442	predicted gene 45442	1515 bp downstream
Rr400324	regulatory region 400324	565 bp upstream
Rr646608	regulatory region 646608	1150 bp distal
Rr646609	regulatory region 646609	216 bp proximal
Rr646610	regulatory region 646610	1426 bp proximal
Tssr72489	transcription start site region 72489	1266 bp upstream
Tssr72490	transcription start site region 72490	432 bp upstream
Tssr72491	transcription start site region 72491	204 bp upstream
Tssr72492	transcription start site region 72492	2 bp downstream
Tssr72493	transcription start site region 72493	26 bp downstream
Tssr72494	transcription start site region 72494	50 bp downstream
Tssr72495	transcription start site region 72495	56 bp downstream
Tssr72496	transcription start site region 72496	75 bp downstream
Tssr72497	transcription start site region 72497	205 bp downstream
Tssr72498	transcription start site region 72498	486 bp downstream
Tssr72499	transcription start site region 72499	636 bp downstream
Tssr72500	transcription start site region 72500	793 bp downstream