rs48282119 SNP Detail

Summary

• ID
  rs48282119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57399804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACCTTCC CTTATGTAGG AAAGACATTA AGAGCCCTAT
  CATTTTTCAA ACATTTTCAT CATCTAGAGT TTGCAATGGA CAAAGCAAAG TTTCCCTTTG
  Y
  TCATCAAAAA AAAAAAAAAT CACATTTCCC TTATGCATAA AAGATGAAGT TACAAGAGAA
  ATTACTTTCT AAAGATTTAT TTATTTTACG TATCTGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132170483	ENSMUSSNP3462801	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323682982	CHEV_11_57322480	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48282119					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57399804 () rs orientation: forward

Symbol	Name	Function Class
Fam114a2	family with sequence similarity 114, member A2	within coordinates
Tssr108113	transcription start site region 108113	1926 bp upstream
Tssr108114	transcription start site region 108114	1872 bp upstream
Tssr108115	transcription start site region 108115	1863 bp upstream
Tssr108116	transcription start site region 108116	1844 bp upstream