rs48282710 SNP Detail

Summary

• ID
  rs48282710
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107467626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCCTGG CTAAACCCAG
  GCTGAGTTCC CAAGCTCGCT GGCTACCTGG TAGGATGGCT GCTGTCCATC AGATGTCAGG
  CTCAGCTGGG ATGGGAACAT CTACAGTCGT AACCTTGGGG TTAGCAAGCT GAGTGGGAGA
  GGCAGACAAG GCAACCCTGA GTTGCTTCCC TGCTGGTTTA TACCCAGGTG AGAAGGCTGA
  K
  TGTCTCTCCA GGCCAGATGC CTCTGGGTCT GGACTGAGTT TGTGTGATGA ACATGGGGTT
  TCCAGACCTG AGACCCCACT CCCTACTTCC TGCTGGGTCA AGGCTAGGTT CTTGGCTTGA
  CCGGGAGCCA GTAGCTCATG AATGATAGAA ATCCCAGGGT CTGGATGCTC CAGGTGACAG
  AATCTCCTGA TCTGTCCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135585290	ENSMUSSNP3680158	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48282710					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107467626 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	956 bp upstream
Rr582999	regulatory region 582999	980 bp distal
Rr583000	regulatory region 583000	650 bp distal
Rr583001	regulatory region 583001	934 bp distal
Rr583002	regulatory region 583002	634 bp distal