rs48283654 SNP Detail

Summary

• ID
  rs48283654
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70417328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTACCAG CTTGGTTTCC ACAGGTACTT GTGGGCAGGG
  GAGGAACAAC GACCCTGAAG GCTCTGGAAC ATAAGGCACT AAAAGGCCTG ACTCCAGATC
  M
  TGATATTGCT TTGTTTGTGA TCTTCCAACC CCACCTTCTA GTATTGAACT GAACGAGCCT
  CCACTAGTCC ACACAGCCGC CAGTCTCTTT AAGGAGATG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132372328	ENSMUSSNP1361412	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss323735965	CHEV_11_70340004	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48283654					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70417328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	960 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Rr369269	regulatory region 369269	1118 bp downstream
Rr450322	regulatory region 450322	1106 bp distal
Tssr102728	transcription start site region 102728	1108 bp downstream
Tssr102729	transcription start site region 102729	571 bp downstream
Tssr102730	transcription start site region 102730	527 bp downstream
Tssr102731	transcription start site region 102731	468 bp downstream