rs48284631 SNP Detail

Summary

• ID
  rs48284631
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59243023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACATCTT TTTGTTTTGG
  TTTAATTTTT TTGAGACAGG GTTTCTCTGT GTAGCCCTGG CTGCCCTGGA ACTCATTCTG
  TAGACCAGGC TGCCCTCAAA CTTAGAGATC TGCTTGCCTG CCTCTGCCTT CTGCGCGCTG
  GAATTAAAGC ATGGGCCACC ACAGCCAGCG AGAAACATGG CTTGGCCATT CTAAAGTCGG
  R
  ATTTTATTTA TGCTATTGCT CCTGTCTGTG TTTTGGGTGC TAGCCCTTTC TTAGCTGCAC
  AGTGTGCTAA TACCTTCTCC GTCTCTCTGC TGCCTCTGGT CTGTCATGGC TCCTTTTTAT
  CTTCAGAAGC TTCACACTGC AGCAAACCTC CACTTTTTAA AATAATTTGA GACAGTGCCT
  CATAGGACCC AGGTGAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52330487	NES15283240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48284631					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52330487	NES15283240	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59243023 () rs orientation: forward

Symbol	Name	Function Class
Pla2g12b	phospholipase A2, group XIIB	within coordinates
Rr215348	regulatory region 215348	223 bp distal
Rr219809	regulatory region 219809	778 bp proximal
Rr219810	regulatory region 219810	1178 bp proximal