rs48285482 SNP Detail

Summary

• ID
  rs48285482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131708872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTTCAA ATATAACTTT
  ATTTTAGAAA ATACAATCTA TTTTTCTTTA GATGTTCACA TTTTTATCTT TACAATGTTT
  TGGTTGAAAA ATTTTGATCG TGAAAGTGGT AAGGGATATC TGGACTGATA CCTAGAATTC
  TTAAAAACAA CAACAACAAA AAACTATATC AATTCAAGTT GGGCATGATG GCACAGGCCT
  R
  TAAACCTAGT ACCTGGGAGG CGGATGATAG CAAGTTATAG GTAGGACAGG GCTACATAGT
  AAGGCTCTGT CTGAAAACAT AAACAAACAA ACAAACAAAT TCAACTCTCT TTTTTCTCTC
  TTTGTAGCCT AGGCTTGCCT TAAACAATCC GCTCGCCTCC AGAGAACTGG TATTACAGGT
  GTAATCTGCC ACACCCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147472307	ENSMUSSNP1803485	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321329603	CHEV_4_131537476	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48285482					SNP	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131708872 () rs orientation: forward

Symbol	Name	Function Class
Epb41	erythrocyte membrane protein band 4.1	within coordinates
Rr600833	regulatory region 600833	384 bp proximal
Rr600834	regulatory region 600834	537 bp proximal
Rr600835	regulatory region 600835	1203 bp proximal
Tssr43622	transcription start site region 43622	1165 bp downstream