rs48285608 SNP Detail

Summary

• ID
  rs48285608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACTAGTC TGTACAACCG
  AGGTATAAAC ACTTTCACTA GGTACACATT CAAGGAATAC CTAACCAAAA AAGAAAGTCA
  CCCCCACAAA TTAGATGCCA GCTTTTTTTT GTTTTGTTTT GTTTTGTTTT GTTTTGTTTT
  GTTTTTTTCG AGACAGGGTT TCTCTGTATA ACCCTGGCTG TCTTGGAACT CACTCTGTAG
  R
  CCAGGCTGGC CTTGAACTCA GAAATCCGCC TGCCTCTGCC TCCCGAGTGC TGGGATTAAA
  GGCGTGCGCC ACCACCGCCC GGTAGATGCC AGCTTTTTAA TAATAGAAAT GCTATGATAT
  TTCTCTTGAG TGTCCAGGCT CCATGTCCCC AGGTTTGTAA CTTTAGTTGA CTGCAGATTA
  TATTGTTTGT GTCGCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137298214	ENSMUSSNP3249638	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48285608					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424618 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	985 bp upstream
Cpgi4477	CpG island 4477	410 bp distal
Gm49586	predicted gene, 49586	271 bp downstream
Rr463712	regulatory region 463712	1178 bp distal
Rr463713	regulatory region 463713	934 bp distal
Rr463714	regulatory region 463714	1053 bp distal
Rr463715	regulatory region 463715	within coordinates
Rr463716	regulatory region 463716	873 bp distal
Rr463717	regulatory region 463717	385 bp distal
Tssr112932	transcription start site region 112932	838 bp downstream
Tssr112933	transcription start site region 112933	360 bp downstream
Tssr115856	transcription start site region 115856	1125 bp upstream
Tssr115857	transcription start site region 115857	1099 bp upstream
Tssr115858	transcription start site region 115858	1071 bp upstream
Tssr115859	transcription start site region 115859	1025 bp upstream
Tssr115860	transcription start site region 115860	1000 bp upstream