rs48285810 SNP Detail

Summary

• ID
  rs48285810
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:3413433 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCAGAAGAGG CGCAAAGCCA
  TCTGAGGTAA GAAGAGCAAG AAGATCAAAG AAATACATCA TCATCCAAGA GGGTGAGGTC
  CAGGGAAGGG GCATCTTTTT GAAGGGCCAT ATAAGGTGGA AAGCAATTCC ATGTGTCAAC
  CCATACACAC ACACACACAC ACACACACAC ACACACACAC ACACACGAAT GTGTATATGC
  W
  CATGCACAAA GCATAAGTGT TCTTAGGAGA GCTGGTGGCT CGTGAGATGG CACAATGGTT
  AAGAACACTG GCTGCTCTTC CAGAGGATCT GGGTTTAAAT CTCTGCACCA CAGTGGCAGC
  TCACCACTGT CTATAACTCC TGTCCTAAGG ATCGGGTAAA ATAAGCCAAG GAGATAAAAG
  TCACGGTAAT ATGTGAGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63342960	NES17508879	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48285810					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63342960	NES17508879	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3413433 () rs orientation: reverse

Symbol	Name	Function Class
Cacng7	calcium channel, voltage-dependent, gamma subunit 7	Intron
Cpgi18210	CpG island 18210	1692 bp proximal
Gm72265	predicted gene, 72265	within coordinates
Tssr64254	transcription start site region 64254	1040 bp upstream
Tssr64255	transcription start site region 64255	1259 bp upstream
Tssr64256	transcription start site region 64256	1276 bp upstream
Tssr64257	transcription start site region 64257	1960 bp upstream