rs48287470 SNP Detail

Summary

• ID
  rs48287470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101126743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTCTGG GTGTTGCTCT
  GTAGGAAAGC ACTTACCTAG TCTGCTCAAG CAAGGCACTG AGTTCAAACC CCAGTAACAC
  AAGAAGAAAA TAAGGAATCA AAGATGTACA TCGCTGTAAC CCTAAAGCTG CTTCTAAGGC
  AGTGCAGCAC CCCAAGTTTT TTCTGTGAAA CTGCCCTGCT GTTCTCATCT GTCTCTCCAC
  Y
  GTCTCCCTGA AATCTGTGCC TGGAGACCCG AGTAACATTT ACTTGAGAAC AAAAAAAAAA
  AAAAAAAAAA AAAAAAAAAA GCAAAAAGAG TGCTTTCAAA GTCAAGCCCC CAAGCGCTTC
  ACGGCTAATC ATGTGCCAAG TCACGTGGCT AGGACAATGA CAGGCAGGGT CGCTGTCCAC
  AAGACCTTTC AATTAGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135545458	ENSMUSSNP5889074	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48287470					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101126743 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	650 bp proximal