rs48288049 SNP Detail

Summary

• ID
  rs48288049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31999087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCACAAGG AATGGACTGA ATGAAATATT GCTATGTTAA
  GTGAAATAAT TCAGACTCAG AAAGTCAAAT ATCACATGCT CATGCATATG TGGACTCTCA
  R
  CTTAAATTTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TAGCTTGAAA GCATAAAGGG
  GAATGCAAGA TGGGGGAGGG GACAAAAGAG GGTGATAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147945910	ENSMUSSNP271115	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48288049					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31999087 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	within coordinates
Tssr137951	transcription start site region 137951	481 bp downstream
Tssr137952	transcription start site region 137952	434 bp downstream
Tssr137953	transcription start site region 137953	419 bp downstream
Tssr137954	transcription start site region 137954	412 bp downstream
Tssr140795	transcription start site region 140795	683 bp upstream
Tssr140796	transcription start site region 140796	661 bp upstream
Tssr140797	transcription start site region 140797	632 bp upstream
Tssr140798	transcription start site region 140798	581 bp upstream