rs48288389 SNP Detail

Summary

• ID
  rs48288389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121615141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGAGTTTG AATCCCCAGA CCCAGGTAAC ACAGCACACG
  GTAGCATGCC TATAATCTGA GCACTCTTAC TTCAGGATGG GAGACAGAGA CAGGAAAAAT
  Y
  CAGAAACCCA CCAGCCAGCT AGCCTGACAG ACAGTAGAGG ACAGAAAGGG GGAAAAGAAA
  AAATCCGTCC TGGCTCACAC TAGGTAAACA AATGGTAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135729807	ENSMUSSNP5019023	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48288389					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121615141 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	1573 bp proximal
Gm42776	predicted gene 42776	1952 bp downstream
Rr584177	regulatory region 584177	675 bp distal
Rr584178	regulatory region 584178	243 bp proximal