rs48289421 SNP Detail

Summary

• ID
  rs48289421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59654367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGCAACAG AGCTCCTGCA TCCTGGAGCC CACAGGCCGC
  ACAGTAACAG TTACAAAATC CCGGACTCTA CAGGTTCCTG CAGCGGCAAC AGAACTTCTA
  Y
  CCACACCCAC CCCCAGAACC AACAGAGCTC CGGCATTCTG GAGGCCACAG GCCACACAGT
  TAATAGTTCC AAAATCTCTG GACCTACAAG TCGCGGCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144685595	ENSMUSSNP6968819	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48289421					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59654367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	within coordinates
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	within coordinates
Rr346	regulatory region 346	421 bp proximal
Rr647544	regulatory region 647544	945 bp distal
Rr647545	regulatory region 647545	within coordinates
Rr647546	regulatory region 647546	420 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	554 bp downstream
Tssr66968	transcription start site region 66968	921 bp downstream
Tssr66969	transcription start site region 66969	185 bp downstream
Tssr72702	transcription start site region 72702	1624 bp upstream
Tssr72703	transcription start site region 72703	1529 bp upstream
Tssr72704	transcription start site region 72704	1463 bp upstream
Tssr72705	transcription start site region 72705	1433 bp upstream
Tssr72706	transcription start site region 72706	625 bp upstream
Tssr72707	transcription start site region 72707	460 bp downstream
Tssr72708	transcription start site region 72708	482 bp downstream
Tssr72709	transcription start site region 72709	533 bp downstream