rs48290420 SNP Detail

Summary

• ID
  rs48290420
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31180560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAATGTT CTGGGTATGT
  GCTGGGGTCT CAGAAGCCTT TGTACTGAGG GTATGGAAGC AGGAAAGACA CTTTGGCTAT
  TCCTAGCTCT TACAGTGACT TTAAAAATCT AGGTATCTGG GCACAAACAA AAGCAAACAT
  CTCATAATAG CAGGGGGTTT TTTGGTCTGT TTTGTTTTGT TTTTGGCAGT CTTTTCTGTT
  S
  TTGAGAATGG TGATTTTAGG GCTGGAGAGA TAGCTAGCTG GTAACATGCT TGCTTTGCAA
  TCATGGGGAC TTGAATTCAA TCCCTAGAAC ACCCCCCCCC CCCACACACA CACACACAAA
  AGCCAAAGGG GGCCCTACAG AGACAGCTCA GTAGTTAAGA GCCCTGACTG CTCTTCCAGA
  GGATCTGGGT CCAGTTCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61369416	NES16744396	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48290420					SNP	C	C	C	C	C	C	G	C	C	C	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61369416	NES16744396	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31180560 () rs orientation: forward

Symbol	Name	Function Class
Gm51733	predicted gene, 51733	1646 bp downstream
Gm69959	predicted gene, 69959	within coordinates
Rr194404	regulatory region 194404	1241 bp proximal
Rr208621	regulatory region 208621	1961 bp distal
Rr208622	regulatory region 208622	1642 bp proximal