rs48291180 SNP Detail

Summary

• ID
  rs48291180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171041799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA CATTTTTGCT TTTAGTGTCC
  K
  CAGTGCTGGG GAGCCCGGTG TCAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119997965	PARCsnp_1.01251	PARC_SEQ	INBRED	f	SNP			G	T
ss146157048	ENSMUSSNP1323990	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320117241	CHEV_1_173144361	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48291180					SNP	T	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171041799 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423242	regulatory region 423242	1058 bp distal
Rr423243	regulatory region 423243	199 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	1780 bp downstream
Tssr9983	transcription start site region 9983	223 bp downstream
Tssr9984	transcription start site region 9984	185 bp downstream