rs48292778 SNP Detail

Summary

• ID
  rs48292778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78181819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTGTAT CCCAAGGGAC
  ACTTCATCTG TTCCTAGTTG ACTGTTCCGG CGTTGCAACC CAGTTATAAA CACTATATGG
  AGCCCAGCTT TGGAAGTTCA GCTTCCAGTC TATCCCAGGA TTGCTTAACT GGCCATACAC
  CATTCTTTGT GCACTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTACCTGAT
  R
  GTAAAGATGT CTAGCCTCTC TTTAAAGGGG ATTTGAGGAG TTGCTCCATC CTGGCCCACA
  GCCTTGGGTA CCTATGTCTG GTGGAGAAAC ATACCCTGTG GCCTGCTTTG AGCAGCCACT
  GGCTGGAAAG GCTGGGAAAG AAGAAGGCTG GGGCAGGGTG GGAGCAGTCA CCAAAGCCAT
  CACCACCCCC CTCGGTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144741408	ENSMUSSNP1249474	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48292778					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78181819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	976 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	1177 bp proximal
Rr370614	regulatory region 370614	1234 bp downstream