rs48292819 SNP Detail

Summary

• ID
  rs48292819
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52263071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAACTAA ATTGTAGAAT
  TACAAAAGTC ACTTACGGTC ACCCTCTGGC CTTTTCTTTA TATGAACATG TGTGCTTTCA
  CACACACACG TGCACACACA AATTTTGTAA AACAAAACAA AACAAAACAA AACAAAACAA
  AACAAAACTC AAATTCTATG GACTCCGGGA GGAATGCTGT AACTGTAGAT GACTTTGAGG
  K
  TTAAGATAAT TCATTATTTA CCTAGGAAAT TCTAAAAGCA GTTGCTTTTC AAACACCTTT
  GATACATGCA ACAGAGCATA TCTAAATAGA TTTTTATACT GTCTAAGGCA TAGACATATT
  TCTTAATCCA CATTAGTCTT TAAAATTTAA ATAATATGTC TTCAACATAG AAATGTTTAT
  TTAGCAATAT TCTGTCTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61275249	NES16771676	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48292819					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61275249	NES16771676	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52263071 () rs orientation: forward

Symbol	Name	Function Class
Gm67152	predicted gene, 67152	within coordinates
Nepn	nephrocan	1997 bp upstream
Rps19-ps10	ribosomal protein S19, pseudogene 10	1882 bp upstream
Rr431355	regulatory region 431355	1392 bp distal
Rr431356	regulatory region 431356	1499 bp distal
Tssr93300	transcription start site region 93300	1988 bp upstream