rs48293018 SNP Detail

Summary

• ID
  rs48293018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103203040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTTCCTT TTGCATTTCC
  TTGAAAAATT TCAAGTGTCA ACGATCATAA ATTTTATGTC TTGTCCTGCT TAAGGAGGAG
  TTCAGTTATT TTTACAGAGG CAAAGCTTTG TGTTCATCCA TGCATAGTTT AAGGATTCTC
  CACGTGGCTT AGTTGAAAGC ATGCTTTGAC TATTGGAAGA GGTAAGTCAG TCTTTAGCTG
  R
  TAGAGATCCT TTGAAGGAGA ATCTGCTACA TAGGCACAGA CCTAAAGTGA GGATTAGTTC
  CCTAATACCA CTTTACACAA CCTCGCTGGG ATCCTTGAGG CTGTCGGGAC TCAGCTGAGA
  AGCAAAGATC CAAAGCTTTT CTTTCACAAA ATATGTAAAT AGATGGTATG GGGGGCTGGA
  GAGGCAGAAA GCCCAGAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52209773	NES15330527	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48293018					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209773	NES15330527	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103203040 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	10 bp downstream
Cpgi2165	CpG island 2165	269 bp proximal
Gm66970	predicted gene, 66970	within coordinates
Rr385217	regulatory region 385217	818 bp upstream
Rr438423	regulatory region 438423	139 bp proximal
Rr438424	regulatory region 438424	675 bp proximal
Rr438425	regulatory region 438425	1285 bp proximal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	604 bp upstream
Tssr95604	transcription start site region 95604	473 bp upstream
Tssr95605	transcription start site region 95605	513 bp upstream
Tssr95606	transcription start site region 95606	569 bp upstream
Tssr99159	transcription start site region 99159	1883 bp downstream