rs48293544 SNP Detail

Summary

• ID
  rs48293544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGAGAGA TGCATGAGCT GTAAAAATTA AAAATAAATA
  AAACCTCAAT GATTTTGCAG AGAATGCTGG GGAGCTGGGA CAGTTGCCCT CTCCCGTGTC
  W
  CAGGCAGTGG GAGGAATGGG TAAGCAGTTT TGGAGGAGGA GAGTTGTCTG AGGGGCCCAG
  GTGGTCAGGA CTCACTTCCT GATCGAGTGG TTGTTCCCAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	WSB/EiJ
ss60972100	NES16154408	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	WSB/EiJ
rs48293544					SNP	A	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972100	NES16154408	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455347 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	507 bp upstream
Gm5586	predicted gene 5586	1512 bp upstream
Tssr64618	transcription start site region 64618	532 bp upstream
Tssr70767	transcription start site region 70767	1482 bp upstream