rs48293662 SNP Detail

Summary

• ID
  rs48293662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:58990478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTTGGGA CTTAATGACC TTGGAGGGCC AAGAAAAAAT
  ATTCTCCCAT TCACTGCCTC TGAACATTAG CCTCCAAGTA TGGTTATTAA ACACTCAGAA
  Y
  GCCATTGTGC AGAAACTCTC TTGTGGCTGC CTCTTCTACT AAAACCAGGC CCAGCACACA
  CAAGTTTTCA TGCATACCAT AGAGAAACCT AATTAAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61014312	NES16119664	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	C	T		T		T	T	T		T
ss144658033	ENSMUSSNP2280669	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T					T
ss322224689	CHEV_7_66596100	CHEVERUD	SCREENING_POP	f	SNP											C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48293662					SNP	T	C	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014312	NES16119664	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:58990478 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm25499	predicted gene, 25499	1496 bp downstream
Snhg14	small nucleolar RNA host gene 14	within coordinates